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Automation and Collaboration in Complex Epidemiological Workflows with OSPREY

  • Jonathan Ozik
  • , Nicholson Collier
  • , Arindam Fadikar
  • , Justin Wozniak
  • , Valerie Hayot-Sasson
  • , Kyle Conroy
  • , Kyle Chard
  • , Jacqueline Wentz
  • , Erin Acquesta
  • , Jaideep Ray
  • Argonne National Laboratory
  • The University of Chicago
  • Sandia National Laboratories

Research output: Contribution to Book/Report types › Contribution to conference proceedings › peer-review

Abstract

Epidemiological modeling, a powerful tool for supporting decision-making during a pandemic, is a workflow problem that incorporates data management of real-time data streams, large-scale simulation and analysis, and complex software integrations. The Open Science Platform for Robust Epidemic Analysis (OSPREY) was introduced to address critical gaps in this challenging scientific application. This paper explores the capabilities of OSPREY regarding data ingestion, curation, and management, and the development of a Shared Development Environment (SDE) for rapid collaboration. We present two use cases to demonstrate the implementation and impact of each of these goals. The first use case highlights real-time data ingestion and curation for epidemiologic modeling, while the second focuses on developing efficient global sensitivity analyses for epidemic models. These advancements aim to enhance OSPREY's capabilities for supporting public health decision-making and reproducible science.

Original languageEnglish
Title of host publication54th International Conference on Parallel Processing, ICPP 2025 - Workshops Proceedings
PublisherAssociation for Computing Machinery, Inc
Pages159-166
Number of pages8
ISBN (Electronic)9798400721090
DOIs
Publication statusPublished - 20 Dec 2025
Externally publishedYes
Event54th International Conference on Parallel Processing Workshop, ICPP 2025 - San Diego, United States
Duration: 8 Sept 2025 → 11 Sept 2025

Publication series

Name54th International Conference on Parallel Processing, ICPP 2025 - Workshops Proceedings

Conference

Conference54th International Conference on Parallel Processing Workshop, ICPP 2025
Country/TerritoryUnited States
CitySan Diego
Period8/09/25 → 11/09/25

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

!!!Keywords

  • HPC workflows
  • automation
  • epidemiological modeling
  • model exploration

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